Package: annotaR 0.1.1
annotaR: Tidy, Integrated Gene Annotation
A framework for intuitive, multi-source gene and protein annotation, with a focus on integrating functional genomics with disease and drug data for translational insights. Methods used include g:Profiler (Raudvere et al. (2019) <doi:10.1093/nar/gkz369>), biomaRt (Durinck et al. (2009) <doi:10.1038/nprot.2009.97>), and the Open Targets Platform (Koscielny et al. (2017) <doi:10.1093/nar/gkw1055>).
Authors:
annotaR_0.1.1.tar.gz
annotaR_0.1.1.zip(r-4.7)annotaR_0.1.1.zip(r-4.6)annotaR_0.1.1.zip(r-4.5)
annotaR_0.1.1.tgz(r-4.6-any)annotaR_0.1.1.tgz(r-4.5-any)
annotaR_0.1.1.tar.gz(r-4.7-any)annotaR_0.1.1.tar.gz(r-4.6-any)
annotaR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
annotaR/json (API)
NEWS
| # Install 'annotaR' in R: |
| install.packages('annotaR', repos = c('https://sulkysubject37.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sulkysubject37/annotar/issues
bioinformatics-pipelinedisease-predictiondrug-discoverygene-annotationgene-enrichment
Last updated from:dfceb51feb. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 213 | ||
| source / vignettes | ERROR | 256 | ||
| linux-release-x86_64 | WARNING | 220 | ||
| macos-release-arm64 | WARNING | 193 | ||
| macos-oldrel-arm64 | WARNING | 201 | ||
| windows-devel | WARNING | 212 | ||
| windows-release | WARNING | 151 | ||
| windows-oldrel | WARNING | 155 | ||
| wasm-release | OK | 139 |
Exports:%>%add_disease_linksadd_drug_linksadd_go_termsannotaRplot_enrichment_dotplot
Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobbriobslibcachemcallrclicpp11crayoncrosstalkcurldata.tableDBIdbplyrdescdiffobjdigestdplyrevaluatefarverfastmapfilelockfontawesomefsgenericsggplot2gluegprofiler2gridExtragtablehighrhmshtmltoolshtmlwidgetshttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeopensslotelpillarpkgbuildpkgconfigpkgloadplotlypngpraiseprettyunitsprocessxprogresspromisespspurrrR6rappdirsRColorBrewerRcppRCurlrlangrmarkdownrprojrootRSQLiteS4VectorsS7sassscalesSeqinfostringistringrsystestthattibbletidyrtidyselecttinytexutf8vctrsviridisLitewaldowithrxfunxml2XVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add disease association data | add_disease_links |
| Add known drug association data | add_drug_links |
| Add GO functional enrichment data | add_go_terms |
| Create an annotaR object | annotaR |
| Plot GO Enrichment Results as a Dot Plot | plot_enrichment_dotplot |
