Package: annotaR 0.1.1

annotaR: Tidy, Integrated Gene Annotation

A framework for intuitive, multi-source gene and protein annotation, with a focus on integrating functional genomics with disease and drug data for translational insights. Methods used include g:Profiler (Raudvere et al. (2019) <doi:10.1093/nar/gkz369>), biomaRt (Durinck et al. (2009) <doi:10.1038/nprot.2009.97>), and the Open Targets Platform (Koscielny et al. (2017) <doi:10.1093/nar/gkw1055>).

Authors:MD. Arshad [aut, cre]

annotaR_0.1.1.tar.gz
annotaR_0.1.1.zip(r-4.7)annotaR_0.1.1.zip(r-4.6)annotaR_0.1.1.zip(r-4.5)
annotaR_0.1.1.tgz(r-4.6-any)annotaR_0.1.1.tgz(r-4.5-any)
annotaR_0.1.1.tar.gz(r-4.7-any)annotaR_0.1.1.tar.gz(r-4.6-any)
annotaR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
annotaR/json (API)
NEWS

# Install 'annotaR' in R:
install.packages('annotaR', repos = c('https://sulkysubject37.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sulkysubject37/annotar/issues

On CRAN:

Conda:

bioinformatics-pipelinedisease-predictiondrug-discoverygene-annotationgene-enrichment

3.18 score 5 scripts 2 downloads 6 exports 105 dependencies

Last updated from:dfceb51feb. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING213
source / vignettesERROR256
linux-release-x86_64WARNING220
macos-release-arm64WARNING193
macos-oldrel-arm64WARNING201
windows-develWARNING212
windows-releaseWARNING151
windows-oldrelWARNING155
wasm-releaseOK139

Exports:%>%add_disease_linksadd_drug_linksadd_go_termsannotaRplot_enrichment_dotplot

Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobbriobslibcachemcallrclicpp11crayoncrosstalkcurldata.tableDBIdbplyrdescdiffobjdigestdplyrevaluatefarverfastmapfilelockfontawesomefsgenericsggplot2gluegprofiler2gridExtragtablehighrhmshtmltoolshtmlwidgetshttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeopensslotelpillarpkgbuildpkgconfigpkgloadplotlypngpraiseprettyunitsprocessxprogresspromisespspurrrR6rappdirsRColorBrewerRcppRCurlrlangrmarkdownrprojrootRSQLiteS4VectorsS7sassscalesSeqinfostringistringrsystestthattibbletidyrtidyselecttinytexutf8vctrsviridisLitewaldowithrxfunxml2XVectoryaml